MSKCC CGDS Cancer Genomics Toolbox

Version 1.5.0.0 (23,9 KB) von Erik Larsson
Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio.
3.0
(2)
1,9K Downloads
Aktualisiert 19 Sep 2013

Lizenz anzeigen

This toolbox provides direct access to cancer genomics data from within the MATLAB environment. The toolbox will query the Cancer Genomics Data Server Web API, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, and return data in a structured format.

A tutorial ('showdemo cgdstutorial') makes it easy to get started.

Zitieren als

Erik Larsson (2024). MSKCC CGDS Cancer Genomics Toolbox (https://www.mathworks.com/matlabcentral/fileexchange/31297-mskcc-cgds-cancer-genomics-toolbox), MATLAB Central File Exchange. Abgerufen .

Kompatibilität der MATLAB-Version
Erstellt mit R2009b
Kompatibel mit allen Versionen
Plattform-Kompatibilität
Windows macOS Linux
Kategorien
Mehr zu Genomics and Next Generation Sequencing finden Sie in Help Center und MATLAB Answers
Quellenangaben

Inspiriert: MSKCC CGDS Cancer Genomics Toolbox v1.07

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Version Veröffentlicht Versionshinweise
1.5.0.0

Version 1.06: Adapted to changes in web API (clinical data). Previous version no longer works correctly. Trailing '/' no longer required in URL. Updated URL in help pages. Updated tutorial for new clinical data format.

1.4.0.0

Bug fixes to cgdstutorial.m
1.3.0.0

Updates to comply with changed naming conventions for case set IDs and genetic profile IDs.

1.2.0.0

Minor update to cgdstutorial.m
1.1.0.0

v1.02 9/5/2011: Adapted to changes in web API.
1.0.0.0