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Data Browser

by Phil Larimer

 

27 Apr 2008 (Updated 28 Apr 2008)

Code covered by the BSD License  

A utility to browse data files that involve one or more channels of data over time.

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File Information
Description

A basic data browsing GUI that allows visualization and measurement of data traces. Included are several functions for detection of various kinds of "events" in data with the ability to define your own event types also. Once detected there are functions for analyzing and characterizing events as well as exporting traces and events. Also, the quickly scalable and rescalable axes allow for easy data viewing and manipulation.

MATLAB release MATLAB 7.5 (R2007b)
Other requirements Signal Processing and Statistics toolboxes are good to have but not necessary.
Zip File Content  
Other Files
Scope/Corel Importer.txt,
Scope/Event Characterization/autoCorrelate.m,
Scope/Event Characterization/calcBurstProb.m,
Scope/Event Characterization/calcSTA.m,
Scope/Event Characterization/calcSTO.m,
Scope/Event Characterization/crosscorrelateSetup.m,
Scope/Event Characterization/intervalHist.m,
Scope/Event Characterization/isiCvEvents.m,
Scope/Event Characterization/jointDist.m,
Scope/Event Characterization/metaCorrEvents.m,
Scope/Event Characterization/plotAverageFreq.m,
Scope/Event Characterization/plotFreq.m,
Scope/Event Characterization/Read Me.txt,
Scope/Event Detection/detectCellAttached.m,
Scope/Event Detection/detectExtracellular.m,
Scope/Event Detection/detectPSP.m,
Scope/Event Detection/detectWCAPs.m,
Scope/Event Detection/Read Me.txt,
Scope/Fitting/fit1Exp.m,
Scope/Fitting/fit2Exp.m,
Scope/Fitting/fit3Exp.m,
Scope/Fitting/fitLine.m,
Scope/Fitting/Read Me.txt,
Scope/Helper Functions/analysisAxis.m,
Scope/Helper Functions/colorSpread.m,
Scope/Helper Functions/Contents.m,
Scope/Helper Functions/exportSettings.m,
Scope/Helper Functions/exportWithAxes.m,
Scope/Helper Functions/exportWithScaleBars.m,
Scope/Helper Functions/msec2point.m,
Scope/Helper Functions/newScale.m,
Scope/Helper Functions/prepForPrint.m,
Scope/Helper Functions/printWithAxes.m,
Scope/Helper Functions/printWithScaleBars.m,
Scope/Helper Functions/setAxisLabels.m,
Scope/Helper Functions/showEvents.m,
Scope/Helper Functions/showFrameMarker.m,
Scope/Helper Functions/showStims.m,
Scope/Helper Functions/timeControl.m,
Scope/matlabCommands.txt,
Scope/newScope.m,
Scope/Trace Characterization/apHeight.m,
Scope/Trace Characterization/apThreshold.m,
Scope/Trace Characterization/apWidth.m,
Scope/Trace Characterization/apWidthHM.m,
Scope/Trace Characterization/fastAHP.m,
Scope/Trace Characterization/fastAHPSlope.m,
Scope/Trace Characterization/Read Me.txt,
Scope/User Manual.rtf,
Scope/User-Added Dependencies/burstingProbability.m,
Scope/User-Added Dependencies/calcMean.m,
Scope/User-Added Dependencies/cell2mat.m,
Scope/User-Added Dependencies/characterizePSPs.m,
Scope/User-Added Dependencies/crossCorr.m,
Scope/User-Added Dependencies/detectPSPs.m,
Scope/User-Added Dependencies/detectSpikes.m,
Scope/User-Added Dependencies/eventTriggeredAverage.m,
Scope/User-Added Dependencies/fcnMin.m,
Scope/User-Added Dependencies/findSteps.m,
Scope/User-Added Dependencies/findStims.m,
Scope/User-Added Dependencies/fitDecayDouble.m,
Scope/User-Added Dependencies/fitDecaySingle.m,
Scope/User-Added Dependencies/fitDecayTriple.m,
Scope/User-Added Dependencies/isiCv.m,
Scope/User-Added Dependencies/metaBar.m,
Scope/User-Added Dependencies/movingAverage.m,
Scope/User-Added Dependencies/MTEO.m,
Scope/User-Added Dependencies/normalizeMatrix.m,
Scope/User-Added Dependencies/oneSidedDeviation.m,
Scope/User-Added Dependencies/overlayPSPs.m,
Scope/User-Added Dependencies/pspGui.m,
Scope/User-Added Dependencies/whichChannel.m
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Tag Applied By Date/Time
data exploration Phil Larimer 22 Oct 2008 09:59:22
event Phil Larimer 22 Oct 2008 09:59:22
electrophysiology Phil Larimer 22 Oct 2008 09:59:22
align Phil Larimer 22 Oct 2008 09:59:22
browse Phil Larimer 22 Oct 2008 09:59:22

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